get_hits

DE.get_hits(*, significance_column='FDR', threshold=0.05, num_top_hits=None)

Get all (or the top) differentially expressed genes.

Parameters:

• significance_column: str

  the name of a numeric column of self.table to determine significance from

• threshold: int | float

  the significance threshold corresponding to significance_column

• num_top_hits: int | None

  the number of top hits to report for each cell type; if None, report all hits

Returns:

The table attribute of this DE object, subset to (top) DE hits.

Return type:

DataFrame