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Installation
Tutorials
SingleCell
Pseudobulk
DE

Installation
Tutorials
SingleCell
Pseudobulk
DE

SingleCell

Analysis
- qc_metrics
- qc
- skip_qc
- find_doublets
- get_sample_covariates
- pseudobulk
- hvg
- normalize
- pca
- neighbors
- shared_neighbors
- harmonize
- cluster
- label_transfer_from
- umap
- pacmap
- localmap
- find_markers
- plot_heatmap
- plot_markers
- plot_umap
- plot_pacmap
- plot_localmap
- plot_embedding
I/O
- save
- ls
- read_obs
- read_var
- read_obsm
- read_varm
- read_obsp
- read_varp
- read_uns
- to_scanpy
- from_seurat
- to_seurat
- from_sce
- to_sce
Properties
- X
- obs
- var
- obsm
- varm
- obsp
- varp
- uns
- obs_names
- var_names
- num_threads
- shape
Data access
- cell
- gene
- peek_obs
- peek_var
Manipulation
- set_obs_names
- set_var_names
- set_num_threads
- make_obs_names_unique
- make_var_names_unique
- filter_obs
- filter_var
- select_obs
- select_var
- select_obsm
- select_varm
- select_obsp
- select_varp
- select_uns
- with_columns_obs
- with_columns_var
- with_obsm
- with_varm
- with_obsp
- with_varp
- with_uns
- drop_X
- drop_obs
- drop_var
- drop_obsm
- drop_varm
- drop_obsp
- drop_varp
- drop_uns
- rename_obs
- rename_var
- rename_obsm
- rename_varm
- rename_obsp
- rename_varp
- rename_uns
- cast_X
- cast_obs
- cast_var
- join_obs
- join_var
- subsample_obs
- subsample_var
- tocsr
- tocsc
- copy
- concat_obs
- concat_var
- split_by_obs
- split_by_var
- pipe
- pipe_X
- pipe_obs
- pipe_var
- pipe_obsm
- pipe_obsm_key
- pipe_varm
- pipe_varm_key
- pipe_obsp
- pipe_obsp_key
- pipe_varp
- pipe_varp_key
- pipe_uns
- pipe_uns_key

SingleCell
Properties
num_threads

num_threads#

property SingleCell.num_threads: int#: The default number of threads used for this SingleCell dataset’s operations.

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SingleCell.num_threads

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