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Installation
Tutorials
SingleCell
Pseudobulk
DE
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Installation
Tutorials
SingleCell
Pseudobulk
DE
SingleCell
Analysis
qc_metrics
qc
skip_qc
find_doublets
get_sample_covariates
pseudobulk
hvg
normalize
pca
neighbors
shared_neighbors
harmonize
cluster
label_transfer_from
umap
pacmap
localmap
find_markers
plot_heatmap
plot_markers
plot_umap
plot_pacmap
plot_localmap
plot_embedding
I/O
save
ls
read_obs
read_var
read_obsm
read_varm
read_obsp
read_varp
read_uns
to_scanpy
from_seurat
to_seurat
from_sce
to_sce
Properties
X
obs
var
obsm
varm
obsp
varp
uns
obs_names
var_names
num_threads
shape
Data access
cell
gene
peek_obs
peek_var
Manipulation
set_obs_names
set_var_names
set_num_threads
make_obs_names_unique
make_var_names_unique
filter_obs
filter_var
select_obs
select_var
select_obsm
select_varm
select_obsp
select_varp
select_uns
with_columns_obs
with_columns_var
with_obsm
with_varm
with_obsp
with_varp
with_uns
drop_X
drop_obs
drop_var
drop_obsm
drop_varm
drop_obsp
drop_varp
drop_uns
rename_obs
rename_var
rename_obsm
rename_varm
rename_obsp
rename_varp
rename_uns
cast_X
cast_obs
cast_var
join_obs
join_var
subsample_obs
subsample_var
tocsr
tocsc
copy
concat_obs
concat_var
split_by_obs
split_by_var
pipe
pipe_X
pipe_obs
pipe_var
pipe_obsm
pipe_obsm_key
pipe_varm
pipe_varm_key
pipe_obsp
pipe_obsp_key
pipe_varp
pipe_varp_key
pipe_uns
pipe_uns_key
SingleCell
Properties
obs
obs
#
property
SingleCell.
obs
:
DataFrame
#
A Polars DataFrame of metadata for each cell.
On this page
SingleCell.obs
