Manipulation

set_obs_names	Sets a column as the new first column of obs, i.e. the obs_names.
set_var_names	Sets a column as the new first column of var, i.e. the var_names.
set_num_threads	Return a new SingleCell dataset with a different default number of threads.
make_obs_names_unique	Make obs_names unique.
make_var_names_unique	Make var_names unique.
filter_obs	Equivalent to df.filter() from polars, but applied to both obs/obsm and X.
filter_var	Equivalent to df.filter() from polars, but applied to both var/varm and X.
select_obs	Equivalent to df.select() from polars, but applied to obs.
select_var	Equivalent to df.select() from polars, but applied to var.
select_obsm	Subsets obsm to the specified key(s).
select_varm	Subsets varm to the specified key(s).
select_obsp	Subsets obsp to the specified key(s).
select_varp	Subsets varp to the specified key(s).
select_uns	Subsets uns to the specified key(s).
with_columns_obs	Equivalent to df.with_columns() from polars, but applied to obs.
with_columns_var	Equivalent to df.with_columns() from polars, but applied to var.
with_obsm	Adds one or more keys to obsm, overwriting existing keys with the same names if present.
with_varm	Adds one or more keys to varm, overwriting existing keys with the same names if present.
with_obsp	Adds one or more keys to obsp, overwriting existing keys with the same names if present.
with_varp	Adds one or more keys to varp, overwriting existing keys with the same names if present.
with_uns	Adds one or more keys to uns, overwriting existing keys with the same names if present.
drop_X	Create a new SingleCell dataset with X removed, to reduce memory use.
drop_obs	Create a new SingleCell dataset with columns and more_columns removed from obs.
drop_var	Create a new SingleCell dataset with columns and more_columns removed from var.
drop_obsm	Create a new SingleCell dataset with keys and more_keys removed from obsm.
drop_varm	Create a new SingleCell dataset with keys and more_keys removed from varm.
drop_obsp	Create a new SingleCell dataset with keys and more_keys removed from obsp.
drop_varp	Create a new SingleCell dataset with keys and more_keys removed from varp.
drop_uns	Create a new SingleCell dataset with keys and more_keys removed from uns.
rename_obs	Create a new SingleCell dataset with column(s) of obs renamed.
rename_var	Create a new SingleCell dataset with column(s) of var renamed.
rename_obsm	Create a new SingleCell dataset with key(s) of obsm renamed.
rename_varm	Create a new SingleCell dataset with key(s) of varm renamed.
rename_obsp	Create a new SingleCell dataset with key(s) of obsp renamed.
rename_varp	Create a new SingleCell dataset with key(s) of varp renamed.
rename_uns	Create a new SingleCell dataset with key(s) of uns renamed.
cast_X	Cast X to the specified data type.
cast_obs	Cast column(s) of obs to the specified data type(s).
cast_var	Cast column(s) of var to the specified data type(s).
join_obs	Left-join obs with another DataFrame.
join_var	Left-join var with another DataFrame.
subsample_obs	Subsample a specific number or fraction of cells.
subsample_var	Subsample a specific number or fraction of genes.
tocsr	Make a copy of this SingleCell dataset, converting X to a csr_array.
tocsc	Make a copy of this SingleCell dataset, converting X to a csc_array.
copy	Make a copy of this SingleCell dataset.
concat_obs	Concatenate one or more other SingleCell datasets with this one, cell-wise.
concat_var	Concatenate one or more other SingleCell datasets with this one, gene-wise.
split_by_obs	The opposite of concat_obs(): splits a SingleCell dataset into a dictionary of SingleCell datasets, one per unique value of a column of obs.
split_by_var	The opposite of concat_var(): splits a SingleCell dataset into a dictionary of SingleCell datasets, one per unique value of a column of var.
pipe	Apply a function to a SingleCell dataset.
pipe_X	Apply a function to a SingleCell dataset's X.
pipe_obs	Apply a function to a SingleCell dataset's obs.
pipe_var	Apply a function to a SingleCell dataset's var.
pipe_obsm	Apply a function to a SingleCell dataset's obsm.
pipe_obsm_key	Apply a function to a specific key in a SingleCell dataset's obsm.
pipe_varm	Apply a function to a SingleCell dataset's varm.
pipe_varm_key	Apply a function to a specific key in a SingleCell dataset's varm.
pipe_obsp	Apply a function to a SingleCell dataset's obsp.
pipe_obsp_key	Apply a function to a specific key in a SingleCell dataset's obsp.
pipe_varp	Apply a function to a SingleCell dataset's varp.
pipe_varp_key	Apply a function to a specific key in a SingleCell dataset's varp.
pipe_uns	Apply a function to a SingleCell dataset's uns.
pipe_uns_key	Apply a function to a specific key in a SingleCell dataset's uns.